OpenRIMS-RPM - Configuration Part 1: Difference between revisions
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This section describes how to use the WHO ATC/DDD standard in OpenRIMS-RPM. | This section describes how to use the WHO ATC/DDD standard in OpenRIMS-RPM. | ||
In the Anatomical Therapeutic Chemical (ATC) classification system, the active substances are divided into different groups according to the organ or system on which they act and their therapeutic, pharmacological, and chemical properties. Drugs are classified at five different levels. | In the Anatomical Therapeutic Chemical (ATC) classification system, the active substances are divided into different groups according to the organ or system on which they act and their therapeutic, pharmacological, and chemical properties. Drugs are classified at five different levels. | ||
Details and tutorials can be found here <nowiki>https://www.who.int/tools/atc-ddd-toolkit/atc-classification</nowiki>. | |||
WHO provides a free online actual electronic list of internationally recognized ATC here <nowiki>https://www.whocc.no/atc_ddd_index/</nowiki>. | |||
In addition, <nowiki>https://www.whocc.no/atc_ddd_index_and_guidelines/order/</nowiki> the ATC data can be ordered in MS Excel format | In addition, <nowiki>https://www.whocc.no/atc_ddd_index_and_guidelines/order/</nowiki> the ATC data can be ordered in MS Excel format at a cost. | ||
Along with ATC codes and active substances, the ATC list contains Defined Daily Dosage (DDD) for active substances. The DDD provides Units of Measurement (UOM) and Routes of Administration dictionaries. | |||
Thus, the electronic list from WHO provides to Pharmadex 2: | |||
* Active ingredients, recognized by WHO and grouped by ATC codes (who.atc.human) | |||
* WHO Dosage units dictionary (dictionary.who.uom) | |||
* WHO route of administration dictionary (dictionary.who.adminroute) | |||
This manual intends for the OpenRIMS-RE supervisor user that is responsible for data maintenance. | |||
This manual intends for | |||
= Source Data = | = Source Data = | ||
The data supported by WHO can be ordered here <nowiki>https://www.whocc.no/atc_ddd_index_and_guidelines/order/</nowiki>. This data contains English and Spanish versions of actual ATC/DDD registered in WHO. The data is in MS Excel (xlsx) format. | |||
= Import data = | = Import data = | ||
Figure 1 Import the WHO ATC-DDD file | Figure 1 Import the WHO ATC-DDD file | ||
# Download the non-official MS Excel file of WHO online data for 2021-12-03 only if you do have not the official data <nowiki>https://www.whocc.no/atc_ddd_index_and_guidelines/order/</nowiki>. | |||
# Upload the MS Excel file to import | |||
# Press “Save” to start the import. The import process will be run in the background. It is possible to do another job, however, the content of the ATC component will be locked. | |||
# Press “Reload” to check the status – how many imported, how many are left | |||
# Intermediate and final statuses will be found under the “dataimport_result” | |||
# The result of the importing will be available here (Figure 2) | |||
Figure 2 The result of the importing | Figure 2 The result of the importing | ||
In addition, such dictionaries will be created: | |||
* dictionary.who.uom – Units of measures | |||
* dictionary.who.adminroute – administrate routes | |||
The values of these dictionaries are from DDD columns in the Excel file. These values are abbreviations that are not clear for a plain user. After the import, it will be recommended to add descriptions of them manually using the official WHO sources <nowiki>https://www.whocc.no/atc_ddd_index/</nowiki>. | The values of these dictionaries are from DDD columns in the Excel file. These values are abbreviations that are not clear for a plain user. After the import, it will be recommended to add descriptions of them manually using the official WHO sources <nowiki>https://www.whocc.no/atc_ddd_index/</nowiki>. | ||
= Re-import = | = Re-import = | ||
The complete data file should be used for re-import. Follow the same procedure as for the initial import. The re-import procedure: | |||
# Makes unusable all ATC records that are not present in the Excel file | |||
# Add new ATC records to the database that is present in the Excel file, but not present in the database | |||
The e-import software determines the ATC record in the Excel file and the database as the same when all the following conditions will occur: | The e-import software determines the ATC record in the Excel file and the database as the same when all the following conditions will occur: | ||
* ATC codes are equals | |||
* DDD, UoM, and Admin Route are equal or empty in the both | |||
For dictionaries dictionary.who.uom and dictionary.who.adminroute: | For dictionaries dictionary.who.uom and dictionary.who.adminroute: | ||
* The existing data will not be re-written | |||
* The new abbreviations will be added | |||
= Country specific data = | = Country specific data = | ||
It is possible when a country uses active ingredients, UoMs, and routes of administration, that are not listed in the WHO data. In this case, this data should be added manually. | |||
* For the active ingredients, country-specific records should be added to the end of the WHO data. The coding and description should follow rules for a particular country. | |||
* UOMs should be added to the dictionary.who.uom | |||
* Route of Administration should be added to the dictionary.who.adminroute | |||
= Languages = | = Languages = | ||
For current, it is no way to determine ATC and active ingredient data in the national language. This feature will be added soon. | |||
For dictionary.who.uom and dictionary.who.adminroute it is possible to add data in the national language like to any other dictionary. | |||
= Usage = | = Usage = | ||
== Component “ATC” == | == Component “ATC” == | ||
The “ATC” component is dedicated to selecting ATC codes. Details can be found here <nowiki>http://redmine.inka.in.ua/documents/129</nowiki>. From November 2022 this component will be deprecated in favor of the “links” component. | |||
Figure 3 ATC component | Figure 3 ATC component | ||
Line 95: | Line 82: | ||
== Component “links” == | == Component “links” == | ||
The “links” is a universal component that allows adding references to the: | |||
* Application's data | |||
* Imported legacy data | |||
* Imported ATC codes | |||
Details can be found here <nowiki>http://redmine.inka.in.ua/documents/129</nowiki>. The usage of this component is strongly recommended instead of the ATC component. | Details can be found here <nowiki>http://redmine.inka.in.ua/documents/129</nowiki>. The usage of this component is strongly recommended instead of the ATC component. | ||
Line 109: | Line 94: | ||
Figure 6 The configuration of the component above | Figure 6 The configuration of the component above | ||
The value of the field “Name” is “Yes, thus the selection will be copied to literals: | |||
* prefLabel - selected ingredient | |||
* description - selected ingredient along with ATC, DDD, and notes | |||
* atc - ATC code |
Revision as of 20:38, 29 January 2024
This section describes how to use the WHO ATC/DDD standard in OpenRIMS-RPM.
In the Anatomical Therapeutic Chemical (ATC) classification system, the active substances are divided into different groups according to the organ or system on which they act and their therapeutic, pharmacological, and chemical properties. Drugs are classified at five different levels.
Details and tutorials can be found here https://www.who.int/tools/atc-ddd-toolkit/atc-classification.
WHO provides a free online actual electronic list of internationally recognized ATC here https://www.whocc.no/atc_ddd_index/.
In addition, https://www.whocc.no/atc_ddd_index_and_guidelines/order/ the ATC data can be ordered in MS Excel format at a cost.
Along with ATC codes and active substances, the ATC list contains Defined Daily Dosage (DDD) for active substances. The DDD provides Units of Measurement (UOM) and Routes of Administration dictionaries.
Thus, the electronic list from WHO provides to Pharmadex 2:
- Active ingredients, recognized by WHO and grouped by ATC codes (who.atc.human)
- WHO Dosage units dictionary (dictionary.who.uom)
- WHO route of administration dictionary (dictionary.who.adminroute)
This manual intends for the OpenRIMS-RE supervisor user that is responsible for data maintenance.
Source Data
The data supported by WHO can be ordered here https://www.whocc.no/atc_ddd_index_and_guidelines/order/. This data contains English and Spanish versions of actual ATC/DDD registered in WHO. The data is in MS Excel (xlsx) format.
Import data
Figure 1 Import the WHO ATC-DDD file
- Download the non-official MS Excel file of WHO online data for 2021-12-03 only if you do have not the official data https://www.whocc.no/atc_ddd_index_and_guidelines/order/.
- Upload the MS Excel file to import
- Press “Save” to start the import. The import process will be run in the background. It is possible to do another job, however, the content of the ATC component will be locked.
- Press “Reload” to check the status – how many imported, how many are left
- Intermediate and final statuses will be found under the “dataimport_result”
- The result of the importing will be available here (Figure 2)
Figure 2 The result of the importing
In addition, such dictionaries will be created:
- dictionary.who.uom – Units of measures
- dictionary.who.adminroute – administrate routes
The values of these dictionaries are from DDD columns in the Excel file. These values are abbreviations that are not clear for a plain user. After the import, it will be recommended to add descriptions of them manually using the official WHO sources https://www.whocc.no/atc_ddd_index/.
Re-import
The complete data file should be used for re-import. Follow the same procedure as for the initial import. The re-import procedure:
- Makes unusable all ATC records that are not present in the Excel file
- Add new ATC records to the database that is present in the Excel file, but not present in the database
The e-import software determines the ATC record in the Excel file and the database as the same when all the following conditions will occur:
- ATC codes are equals
- DDD, UoM, and Admin Route are equal or empty in the both
For dictionaries dictionary.who.uom and dictionary.who.adminroute:
- The existing data will not be re-written
- The new abbreviations will be added
Country specific data
It is possible when a country uses active ingredients, UoMs, and routes of administration, that are not listed in the WHO data. In this case, this data should be added manually.
- For the active ingredients, country-specific records should be added to the end of the WHO data. The coding and description should follow rules for a particular country.
- UOMs should be added to the dictionary.who.uom
- Route of Administration should be added to the dictionary.who.adminroute
Languages
For current, it is no way to determine ATC and active ingredient data in the national language. This feature will be added soon.
For dictionary.who.uom and dictionary.who.adminroute it is possible to add data in the national language like to any other dictionary.
Usage
Component “ATC”
The “ATC” component is dedicated to selecting ATC codes. Details can be found here http://redmine.inka.in.ua/documents/129. From November 2022 this component will be deprecated in favor of the “links” component.
Figure 3 ATC component
Figure 4 ATC component configuration
Component “links”
The “links” is a universal component that allows adding references to the:
- Application's data
- Imported legacy data
- Imported ATC codes
Details can be found here http://redmine.inka.in.ua/documents/129. The usage of this component is strongly recommended instead of the ATC component.
Figure 5 Usage of component "links" for active ingredient references
Figure 6 The configuration of the component above
The value of the field “Name” is “Yes, thus the selection will be copied to literals:
- prefLabel - selected ingredient
- description - selected ingredient along with ATC, DDD, and notes
- atc - ATC code